anatomy & physiology

Thorax & Respiratory System

Integrated notes for USMLE Step 1

πŸ”¬ histology 🧬 embryology 🫁 lung anatomy βš•οΈ clinical

πŸ«€ Chest wall & mammary gland

Mammary gland – modified sweat gland, subcutaneous. Fat determines size/shape. Suspensory (Cooper) ligaments attach skin to deep fascia; tumor infiltration causes skin dimpling (peau d'orange).

Vascular supply

  • Internal thoracic artery (subclavian branch) β†’ medial breast.
  • Lateral thoracic artery (axillary branch) β†’ lateral breast, runs with long thoracic nerve (superficial to serratus anterior).

Lymphatic drainage (key for metastasis)

  • 75% β†’ axillary nodes (especially pectoral group) from nipple & upper/lateral/inferior quadrants.
  • Medial quadrant β†’ parasternal nodes (along internal thoracic vessels); can spread to contralateral breast.
Clinical During radical mastectomy, long thoracic nerve injury β†’ winged scapula + weakness in arm abduction above 90Β°. Thoracodorsal nerve damage β†’ weakness in extension & medial rotation of arm.

🧬 Embryology – lower respiratory system

Timeline & origin

  • Week 4: respiratory (laryngotracheal) diverticulum from ventral foregut endoderm.
  • Endoderm β†’ epithelium; mesoderm β†’ cartilage, muscle, CT.
  • Distal enlargement β†’ lung bud β†’ bifurcation into 2 bronchial buds β†’ branching to main, secondary, tertiary bronchi by month 6.
  • Tertiary bronchi correspond to bronchopulmonary segments.

Tracheoesophageal septum

  • Separates trachea from esophagus.
  • Defective septum β†’ tracheoesophageal fistula (most common: distal third of trachea to esophagus).
  • Associated with esophageal atresia, polyhydramnios, regurgitation, choking/cyanosis after feeding, abdominal distention, pneumonitis.
⚠️ Pulmonary hypoplasia causes: congenital diaphragmatic hernia (left lung affected) & bilateral renal agenesis (oligohydramnios β†’ Potter sequence).

🫁 Pleura & pleural cavity

Serous membranes: parietal (outer) and visceral (inner). Pleural cavity = potential space with thin serous fluid for friction-free movement.

Parietal pleura – regional parts

  • Costal – lines ribs & intercostal spaces.
  • Diaphragmatic – covers thoracic surface of diaphragm.
  • Mediastinal – covers mediastinum, reflects at hilum to become visceral.
  • Cervical – extends above 1st rib (cupula).

Innervation

  • Parietal: intercostal nerves (costal & peripheral diaphragmatic) β†’ local dermatomal pain.
  • Central diaphragmatic & mediastinal pleura: phrenic nerve (C3–C5) β†’ referred shoulder pain.
  • Visceral pleura: autonomic visceral afferents.

Pleural reflections & recesses

  • Sternal reflection: costal β†’ mediastinal (costal cartilages 2–4).
  • Costodiaphragmatic recess: space between costal & diaphragmatic pleura, lungs do not occupy except deep inspiration.
  • Costomediastinal recess: left side, due to cardiac notch; occupied by lingula during inspiration.
LandmarkVisceral pleura (lung)Parietal pleura
Midclavicular6th rib8th rib
Midaxillary8th rib10th rib
Paravertebral10th rib12th rib
Pneumothorax Open: air enters via chest wall wound, mediastinum shifts away during inspiration, back during expiration. Tension: flap-valve mechanism, air trapped β†’ mediastinal shift worsens, compresses opposite lung & reduces venous return – life-threatening.

Lungs – surfaces, lobes, lymph

Surfaces

  • Costal – smooth, convex, adjacent to ribs.
  • Mediastinal – concave, contains hilum and cardiac impression (deeper on left).
  • Diaphragmatic (base) – rests on diaphragm; right side higher due to liver.

Lobes & fissures

  • Right lung: 3 lobes (superior, middle, inferior) – horizontal & oblique fissures.
  • Left lung: 2 lobes (superior, inferior) – oblique fissure; lingula corresponds to right middle lobe.

Lymphatic drainage

  • Superficial plexus (under visceral pleura) & deep plexus (along bronchi).
  • Bronchopulmonary (hilar) nodes β†’ receive from both plexuses.
  • Tracheobronchial nodes β†’ at bifurcation β†’ bronchiomediastinal trunks.
  • Left lower lobe can drain to right bronchiomediastinal trunk β†’ right lymphatic duct (important for metastasis).
High yield Right main bronchus is shorter, wider, more vertical β†’ aspirated foreign bodies more often enter right lung (posterior basal segment of inferior lobe).

Pancoast tumor

Apical lung tumor β†’ thoracic outlet syndrome (compression of subclavian vessels/brachial plexus).

πŸ”¬ Respiratory histology

Lung surface area ~120 mΒ². Air-blood barrier: surfactant + type I pneumocyte + shared basal lamina + capillary endothelium (thickness ~0.1–0.5 Β΅m).

Trachea & bronchi – epithelium

  • Pseudostratified ciliated columnar with goblet cells (mucous), basal cells (stem cells), brush cells, neuroendocrine (Kulchitsky) cells.
  • Cilia beat to move mucous toward pharynx (mucociliary escalator).
  • Goblet cells & submucosal glands produce mucous; traps dust/pathogens.
⚠️ Cystic fibrosis: thick mucous due to defective chloride transport β†’ impaired mucociliary clearance β†’ recurrent infections.

Bronchioles

  • No cartilage, no glands. Epithelium: ciliated simple cuboidal/columnar.
  • Clara cells (bronchiolar secretory): nonciliated, secrete surfactant-like fluid, detoxify, stem cells; abundant in terminal bronchioles (~80% of cells).
  • Terminal bronchioles β†’ last conducting airways; then respiratory bronchioles (with alveoli in walls) β†’ alveolar ducts & sacs.
COPD Emphysema (loss of elastic fibers) vs asthma (reversible airway narrowing). Emphysema – irreversible; asthma – reversible.

Trachea, bronchi & bronchioles – structural comparison

FeatureTracheaBronchiBronchioles
EpitheliumPseudostratified ciliated columnar, goblet cellsPseudostratified β†’ simple columnarSimple cuboidal/columnar, ciliated + Clara cells
Cartilage16–20 C-shaped ringsIrregular platesNone
GlandsSeromucousFewer seromucousNone
Smooth muscleBetween open ends of C-ringsProminentHighest proportion (elastic fibers)

Epithelial cell types

  • Columnar – 200–300 cilia, microvilli.
  • Goblet – secrete mucin.
  • Basal – stem cells.
  • Neuroendocrine (Kulchitsky) – APUD, DNES; at airway branch points; can give rise to bronchial carcinoid.
Squamous metaplasia Chronic irritation (smoking) β†’ ciliated columnar β†’ squamous (reversible if stimulus removed). Kartagener syndrome – dynein defect β†’ immotile cilia β†’ recurrent respiratory infections, male infertility.

Alveolar ducts, sacs & alveoli

Alveoli constitute 80–85% lung volume. ~300 million alveoli, each ~200 Β΅m diameter.

Type I pneumocytes

  • Cover 90–95% of alveolar surface, but only 40% of cells.
  • Very thin (squamous) – main site of gas exchange.
  • Post-mitotic (cannot divide).

Type II pneumocytes

  • 60% of cells, cover 5–10% of surface.
  • Produce surfactant (phospholipid/protein mixture) that reduces surface tension, prevents alveolar collapse.
  • Stem cells for type I & type II.
  • Contain lamellar bodies (myelin figures).
Alveolar wall – rich capillary network (pulmonary arteries). Contains fibroblasts, macrophages, myofibroblasts, mast cells. Collagen (type I in bronchi/bronchioles) & elastic fibers (recoil). Pores of Kohn – collateral ventilation (10–15 Β΅m).
Alveolar air β†’ Surfactant β†’ Type I cell β†’ Basal lamina (shared) β†’ Capillary endothelium β†’ Blood
Respiratory distress syndrome Surfactant deficiency (prematurity, maternal diabetes, asphyxia). Leads to atelectasis, hyaline membrane disease (eosinophilic fluid). Corticosteroids accelerate surfactant synthesis; insulin antagonizes this effect.

βš•οΈ Clinical pearls & high-yield summary

Intercostal spaces

  • VAN (vein–artery–nerve) in costal groove; nerve inferior.
  • Thoracentesis: lower part of space to avoid neurovascular bundle.
  • Intercostal nerve block: upper part of space.

Diaphragm & pleura

  • Central diaphragmatic pleura innervated by phrenic nerve (C3–C5) β†’ referred shoulder pain.
  • Costal pleura β†’ intercostal nerves β†’ local chest pain.

Embryology recall

  • Tracheoesophageal fistula: most common type (90%) – distal esophagus to trachea.
  • Congenital diaphragmatic hernia β†’ left lung hypoplasia.
  • Bilateral renal agenesis β†’ oligohydramnios β†’ Potter sequence β†’ pulmonary hypoplasia.

Lung auscultation

  • Upper lobes: anterior chest above 4th rib (right) / left similar.
  • Right middle lobe: anterior chest below 4th rib, medial.
  • Inferior lobes: posterior chest.
High-yield facts
  • Pancoast tumor – apical lung cancer β†’ Horner syndrome (if sympathetic chain involved) + thoracic outlet.
  • Mesothelioma – malignant pleural tumor linked to asbestos.
  • Kulchitsky cells – neuroendocrine β†’ carcinoid tumors (bronchial carcinoid).
  • Clara cells – stem cells, detoxification, chloride transport; defective in cystic fibrosis.
  • Emphysema – loss of elastic fibers β†’ air trapping, irreversible.
  • Asthma – reversible bronchoconstriction.