innate immunity · rapid response

Innate immunity · foundations

USMLE Step 1 · rapid response · no memory for pathogens

🛡️ Barriers & first-line defenses

Innate immunity is present from birth, acts within minutes to hours, and does not improve with repeated exposure. It relies on physical, chemical, and cellular barriers.

Physical barriers

  • Skin: intact keratinized epithelium; slightly acidic pH (5.5) retards bacterial growth.
  • Respiratory tract: mucus-coated ciliated epithelium traps and propels microbes outward; antimicrobial enzymes (lysozyme) in secretions.
  • GI tract: gastric acid (pH 1.5–3.5) destroys most ingested pathogens; intestinal mucus and antimicrobial peptides (defensins) provide additional protection.
  • Other: tears, saliva, breast milk contain lysozyme and lactoferrin.

Physiologic & chemical barriers

  • Fever: pyrogenic cytokines (IL-1, IL-6, TNF) raise hypothalamic set point, inhibiting pathogen growth.
  • Lysozyme: cleaves bacterial peptidoglycan.
  • Defensins: pore-forming peptides in phagocytes and epithelial cells.
  • Interferons α/β: induce an antiviral state by transiently blocking protein synthesis in neighboring cells.
💡 High‑yield: γδ T cells reside in epithelia and recognise shared microbial structures — they are considered part of the innate arm.

🧬 Innate cellular components

Neutrophils (polymorphonuclear leukocytes)
• most abundant circulating phagocyte
• short-lived, first responders (peak 6 h)
• multilobed nucleus, granules
Monocytes / macrophages
• monocytes in blood → macrophages in tissues
• long-lived, potent phagocytes & cytokine producers
• M1 (classical, pro-inflammatory) vs M2 (anti-inflammatory, repair)
Dendritic cells
• professional antigen-presenting cells
• bridge innate and adaptive immunity
Mast cells
• reside in skin & mucosa
• activated via TLR or IgE; release histamine and inflammatory mediators
Natural killer (NK) cells: large granular lymphocytes, CD16⁺ CD56⁺. Kill virus-infected or transformed cells via perforin/granzymes. Do not express antigen-specific receptors; rely on balance of activating (KAR) and inhibitory (KIR) signals.

🔍 Pattern recognition receptors (PRRs)

Germline-encoded receptors that recognise PAMPs (pathogen-associated molecular patterns) and DAMPs (damage-associated patterns).

Receptor familyExamplesLigands
Toll-like (TLR) extracellularTLR-4, TLR-2, TLR-5LPS, peptidoglycan, flagellin
TLR endosomalTLR-3, TLR-7/8, TLR-9dsRNA, ssRNA, CpG DNA
NOD-like (NLR)NOD2, NLRP3bacterial peptidoglycan, uric acid, ATP, ROS
RIG-like (RLR)RIG-1, MDA-5viral RNA
Clinical correlate: NOD2 mutations are associated with inflammatory bowel disease (IBD); defects in TLR signalling lead to recurrent bacterial infections. Gain-of-function in NLRP3 inflammasome contributes to gout, atherosclerosis, and type 2 diabetes.

🔥 Inflammasome

Multiprotein complex in myeloid cells that acts as a sensor for microbes and cellular stress.
Activation of NLRP3 inflammasome → caspase-1 cleavage of pro-IL-1β and pro-IL-18 into active, pro-inflammatory cytokines.

  • Triggers: microbial products, ATP, uric acid crystals, reactive oxygen species.
  • Key role in sterile inflammation (e.g., gout).

🧪 Complement system

Liver-derived zymogens that amplify inflammation, opsonisation, and membrane attack. Three pathways: classical (Ab-dependent), lectin (MBL, Ab-independent), and alternative (spontaneous on microbial surfaces).

ComponentFunction
C3a, C4a, C5aanaphylatoxins (mast cell degranulation, smooth muscle contraction)
C5apotent chemotactic factor for neutrophils
C3bopsonin; enhances phagocytosis; clears immune complexes
C5b–C9membrane attack complex (MAC) – lysis of bacteria
📌 USMLE: Mannose-binding lectin (MBL) pathway activates complement without antibody — part of innate immunity.

🚨 Acute inflammation & leukocyte extravasation

Triggered by tissue injury or microbial products. Four sequential steps:

  1. Rolling: selectins on endothelium bind mucin-like molecules on leukocytes (weak, transient).
  2. Activation: chemokines (IL-8), C5a, f-Met peptides bind leukocyte receptors → integrin conformational change.
  3. Arrest / adhesion: integrins (e.g., LFA-1) bind Ig-superfamily CAMs (ICAM-1) on endothelium – firm adhesion.
  4. Transmigration: leukocytes squeeze between endothelial cells into tissue.
Leukocyte adhesion deficiency (LAD): autosomal recessive defect in CD18 (β₂ integrin chain). Patients have recurrent bacterial infections, no pus formation, marked neutrophilia. Diagnosis by flow cytometry for CD18.

🧫 Phagocytosis & intracellular killing

Opsonisation by IgG or C3b increases phagocytic efficiency up to 4000‑fold.

Respiratory burst
• NADPH oxidase → superoxide (O₂⁻)
• superoxide dismutase → H₂O₂
• myeloperoxidase (MPO) → HOCl (bleach)
Oxygen‑independent
• lysozyme, defensins, lactoferrin, hydrolytic enzymes
Nitric oxide (NO): iNOS converts arginine to NO, potent antimicrobial.
Chronic granulomatous disease (CGD): defect in NADPH oxidase subunit → no superoxide / H₂O₂.
• Catalase‑positive organisms (S. aureus, Aspergillus, Klebsiella) survive because they destroy H₂O₂.
• Catalase‑negative bacteria supply H₂O₂ for MPO → killing occurs.
• Diagnosis: NBT test (negative in CGD) or dihydrorhodamine flow cytometry.

⚠️ Phagocyte defects – high yield

DisorderDefectConsequence
LAD (type I)CD18 (β₂ integrin)no adhesion / extravasation; recurrent bacterial infections, omphalitis
CGDNADPH oxidase (any subunit)no respiratory burst; recurrent catalase‑positive infections; NBT negative
MPO deficiencymyeloperoxidasemild, often asymptomatic; Candida susceptibility
💊 Treatment: CGD patients benefit from IFN‑γ (boosts macrophage activity) and prophylactic antibiotics. Bone marrow transplantation is curative for LAD.

🧪 Cytokines in innate immunity

CytokineMain sourceInnate actions
IL‑1, IL‑6, TNF‑αmacrophagesfever, acute‑phase proteins, endothelial activation, cachexia
IL‑8 (CXCL8)macrophagesneutrophil chemotaxis and adhesion
IL‑12macrophages, DCsNK cell IFN‑γ production
IL‑10macrophages, DCsanti‑inflammatory; inhibits IL‑12, MHC class II
IFN‑α / βvirally infected cellsantiviral state, increased MHC I, NK activation
TGF‑βmacrophages, lymphocytesanti‑inflammatory, tissue repair
Systemic effects: IL‑1, IL‑6, TNF‑α induce fever, leukocytosis, and hepatic acute‑phase protein synthesis (CRP, serum amyloid A).

🧬 Antiviral innate response: IFN & NK

Type I interferons (IFN‑α/β)

  • Produced by virus‑infected cells (and DCs, fibroblasts).
  • Induce an antiviral state in neighboring cells by activating RNA endonuclease (degrades viral RNA) and phosphorylating eIF2 (inhibits protein synthesis).
  • Increase MHC class I expression and activate NK cells.

Natural killer (NK) cells

  • Killer activating receptors (KAR): bind stress‑induced ligands (e.g., MIC proteins) → kill.
  • Killer inhibitory receptors (KIR): bind HLA‑E (which presents HLA‑A/B/C leader peptides) → inhibitory signal dominates.
  • When cells lose MHC class I (viral or tumour), HLA‑E decreases → KIR signal lost → NK kills.
  • ADCC: via CD16 (FcγRIII) — antibody‑coated target cells are lysed.
📌 Clinical use: IFN‑α for hepatitis B/C and hairy cell leukaemia; IFN‑β for multiple sclerosis; IFN‑γ for CGD.

📋 Innate immunity at a glance

  • Barriers: skin, mucosa, pH, lysozyme
  • PRRs: TLR, NLR, RLR
  • Inflammasome → IL‑1β, IL‑18
  • Complement: opsonins, anaphylatoxins, MAC
  • Extravasation: selectins → integrins → diapedesis
  • Phagocytosis: respiratory burst, MPO, NO
  • CGD: NADPH oxidase defect, catalase‑positive infections
  • LAD: CD18 deficiency, no pus
  • NK cells: KAR/KIR balance, HLA‑E
  • Interferons: antiviral, immunomodulatory
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