Pathogen · Mycology

📌 Medical Mycology

Essential concepts for clinical practice & board preparation

Eukaryotic pathogens Cell wall: chitin/glucan Membrane: ergosterol

Fungi are ubiquitous, heterotrophic eukaryotes. Their rigid cell wall (chitin, glucan, mannan) and ergosterol-containing membrane are key therapeutic targets. Unlike bacteria, they possess 80S ribosomes and a true nucleus.

🧫 Fungal cell biology & antifungals

🔬 Structure
  • Cell wall: chitin, β-glucan, mannoproteins
  • Membrane: ergosterol (analogous to cholesterol)
  • Ribosomes: 80S (eukaryotic)
💊 Drug targets
  • Azoles – inhibit ergosterol synthesis (lanosterol 14α-demethylase)
  • Polyenes (amphotericin B) – bind ergosterol, form pores
  • Echinocandins – inhibit β-glucan synthase
  • Flucytosine – inhibits DNA/RNA synthesis
Clinical pearl: Amphotericin B has higher affinity for ergosterol than cholesterol, but nephrotoxicity limits use. Lipid formulations reduce toxicity.

🔬 Fungal morphology & dimorphism

HyphaeYeastsPseudohyphaeDimorphic
  • Hyphae: filamentous units; septate (cross-walls) vs coenocytic (nonseptate, broad, irregular branching).
  • Yeasts: unicellular, round/oval; reproduce by budding (blastoconidia).
  • Pseudohyphae: elongated yeast cells with constrictions at septa (e.g., Candida).
  • Dimorphic fungi: switch between mold (environment, 25°C) and yeast (tissue, 37°C). Key genera: Histoplasma, Blastomyces, Coccidioides, Sporothrix, Paracoccidioides.
High‑yield: Thermal dimorphism is a virulence trait; tissue forms are typically yeast or spherules (Coccidioides).
Spore types
  • Conidia – asexual, airborne
  • Blastoconidia – buds
  • Arthroconidia – fragmentation of hyphae
  • Spherules/endospores – unique to Coccidioides (in tissue)

🧪 Diagnostic methods

🔬 Microscopy
  • KOH wet mount – clears keratin, reveals hyphae/yeasts
  • Calcofluor white – binds chitin, fluorescent (fast)
  • Silver stain (GMS) – black/gray; excellent for Pneumocystis
  • PAS – hot pink fungal elements
  • India ink – capsule halo (Cryptococcus); low sensitivity
🧪 Culture & serology
  • Sabouraud agar (with antibiotics) – inhibits bacteria
  • Serology: antibody (complement fixation), antigen detection (e.g., cryptococcal capsular Ag, galactomannan)
  • Molecular: PCR, nucleic acid probes
  • Skin test – epidemiological, not diagnostic (indicates exposure)
Remember: Histoplasma can be detected in peripheral blood (RES), Cryptococcus antigen in CSF is highly sensitive.

🦠 Superficial & cutaneous mycoses

Malassezia furfur

  • Lipophilic yeast, normal skin flora.
  • Pityriasis versicolor: hypopigmented macules on trunk; KOH shows “spaghetti & meatballs” (yeast + hyphae); Wood lamp → coppery-orange fluorescence.
  • Treatment: topical selenium sulfide or azoles.
  • Risk: premature infants on IV lipids → fungemia.

Dermatophytes (Trichophyton, Microsporum, Epidermophyton)

  • Infect keratinized tissues (skin, hair, nails). No systemic invasion.
  • Tinea corporis, cruris, pedis, capitis, unguium. Itching prominent.
  • Diagnosis: KOH (arthroconidia), Wood lamp (Microsporum → yellow-green).
  • Treatment: topical azoles/tolnaftate; oral griseofulvin/azoles for hair/nail.
  • ID reaction (dermatophytid): allergic response to circulating antigens.
Clinical pearl: Zoophilic strains cause more inflammation than anthropophilic.

🌿 Subcutaneous mycoses

Sporothrix schenckii

  • Dimorphic (mold in environment, cigar-shaped yeast in tissue).
  • Traumatic inoculation (roses, thorns, moss).
  • Sporotrichosis: lymphocutaneous nodules; pulmonary in alcoholics.
  • Treatment: itraconazole (mild), amphotericin B (severe).
“Rose gardener’s disease” – classic lymphocutaneous spread.

🌎 Systemic (endemic) mycoses

Histoplasma Coccidioides Blastomyces Paracoccidioides

All cause acute pulmonary (often self-limiting) or chronic/disseminated disease.

Histoplasma capsulatum
  • Ohio/Mississippi river valleys; bird/bat droppings.
  • Intracellular yeast in RES cells (narrow-neck budding).
  • “Fungus flu”: hepatosplenomegaly, calcified lesions.
  • Dissemination in AIDS; treat with itraconazole or amphotericin B.
Coccidioides immitis
  • Southwestern US (San Joaquin Valley).
  • Arthroconidia → spherules with endospores in tissue.
  • Valley fever: erythema nodosum (good prognosis).
  • Risk: pregnancy (3rd trimester), immunocompromised.
Blastomyces dermatitidis
  • Upper Great Lakes, southeastern US; rotting wood.
  • Broad-based budding yeast, double-contoured wall.
  • Less likely to self-resolve; treat even acute infection.
Paracoccidioides brasiliensis
  • South/Central America (Brazil).
  • Multiple buds (pilot wheel) in tissue.
  • Juvenile: lymphadenopathy, hepatosplenomegaly; adult: pulmonary fibrosis, oral lesions.
Treatment summary: Itraconazole for mild/moderate, amphotericin B for severe/disseminated.

⚠️ Opportunistic fungi

Aspergillus fumigatus

  • Septate, dichotomous branching at 45°.
  • Allergic bronchopulmonary aspergillosis (ABPA), aspergilloma, invasive disease (neutropenia, CGD).
  • Treatment: voriconazole (invasive), itraconazole (ABPA).

Candida albicans

  • Germ tube positive; pseudohyphae and true hyphae in tissue.
  • Thrush, esophagitis, vaginitis, perleche, septicemia with endophthalmitis.
  • Risk: antibiotics, immunosuppression, diabetes, IVDU.
  • Treatment: topical azoles, nystatin, fluconazole/amphotericin B for disseminated.

Cryptococcus neoformans

  • Encapsulated yeast, pigeon droppings.
  • Meningitis (HIV, Hodgkin), pulmonary infection.
  • CSF: antigen detection (LPA), India ink (halo), culture (urease+).
  • Treatment: amphotericin B + flucytosine, then fluconazole.

Mucorales (Rhizopus, Mucor, Absidia)

  • Nonseptate, broad ribbon-like hyphae, right-angle branching.
  • Rhinocerebral mucormycosis: diabetic ketoacidosis, neutropenia.
  • Rapid invasion; treat with debridement + amphotericin B.

Pneumocystis jirovecii

  • Fungus (silver stain cysts); extracellular.
  • Pneumonia in AIDS (CD4 < 200), malnourished infants.
  • X-ray: ground-glass, bilateral infiltrates.
  • Treatment: TMP-SMX (mild), dapsone (moderate).

📊 Comparison tables

Dimorphic fungi · tissue forms

FungusEnvironmental formTissue formEndemic region
HistoplasmaHyphae + macroconidiaIntracellular yeast (narrow bud)Ohio/Mississippi valleys
CoccidioidesArthroconidiaSpherules + endosporesSouthwestern US
BlastomycesHyphae with conidiaBroad-based budding yeastGreat Lakes, SE US
ParacoccidioidesSeptate hyphaeMultiple buds (pilot wheel)Central/South America
SporothrixHyphae + rosette conidiaCigar-shaped yeastWorldwide

Opportunistic fungi · key features

FungusMorphologyPredispositionClassic disease
AspergillusSeptate, 45° branchingNeutropenia, CF, asthmaABPA, aspergilloma, invasive
CandidaPseudohyphae, germ tubesAntibiotics, DM, HIVThrush, esophagitis, septicemia
CryptococcusEncapsulated yeastHIV, HodgkinMeningitis
MucoralesNonseptate, broadDKA, neutropeniaRhinocerebral mucormycosis
PneumocystisCysts (silver stain)CD4 < 200Pneumonia (PCP)

Antifungal drug targets

ClassMechanismExamplesNotable side effects
AzolesInhibit ergosterol synthesisFluconazole, itraconazole, voriconazoleHepatotoxicity, CYP interactions
PolyenesBind ergosterol, pore formationAmphotericin BNephrotoxicity, infusion reactions
EchinocandinsInhibit β-glucan synthaseCaspofungin, micafunginWell tolerated, limited oral
FlucytosineInhibits DNA/RNA synthesis5-FCMyelosuppression, GI

💡 High‑yield pearls & exam points

  • Dimorphic fungi – endemic in specific geographic areas; tissue forms are diagnostic.
  • Cryptococcus – India ink (insensitive), antigen detection is the gold standard.
  • Pneumocystis – does not stain with H&E; silver stain shows cysts.
  • Mucor – rapid, angioinvasive; debridement is essential.
  • Candida – germ tube test (serum at 37°C) positive for C. albicans.
  • Histoplasma – intracellular in macrophages; “tiny yeast” with narrow bud.
  • Aspergillus – galactomannan antigen; voriconazole is first-line.
  • Antifungal resistance – azole resistance emerging in Aspergillus, Candida.
Board style: “A patient from Ohio with flu-like symptoms, hepatosplenomegaly, and calcified lung nodules” → Histoplasma.