Pharmacology · Antimicrobial Therapy

Antibiotics & Antitubercular Drugs

Mechanisms, resistance, adverse effects, and clinical applications — a comprehensive review for medical learners.

⚕️ Principles of Antimicrobial Therapy

  • Bactericidal — directly kill organisms
    • β-lactams, vancomycin, aminoglycosides, fluoroquinolones, metronidazole, rifampin
  • Bacteriostatic — inhibit growth; host immune system clears infection
    • Tetracyclines, macrolides, clindamycin, chloramphenicol, sulfonamides, trimethoprim, linezolid
  • Combination therapy
    • Additive — effects sum (e.g., sulfamethoxazole + trimethoprim)
    • Synergistic — effect > sum of parts (e.g., penicillin + aminoglycoside for enterococci)
    • Antagonistic — effect < sum (e.g., penicillin + tetracycline; bacteriostatic impairs cell-wall synthesis)
  • Key mechanisms of action
    • Cell-wall synthesis — β-lactams, vancomycin
    • Protein synthesis — aminoglycosides, tetracyclines, macrolides, chloramphenicol, clindamycin, linezolid
    • Nucleic acid synthesis — fluoroquinolones (DNA gyrase), rifampin (RNA polymerase)
    • Folate synthesis — sulfonamides, trimethoprim, pyrimethamine
📌 High-Yield
  • Bactericidal drugs are preferred in immunocompromised patients and in life-threatening infections.
MechanismDrug ClassExamples
Cell-wall inhibitionβ-lactams, glycopeptidesPenicillins, cephalosporins, vancomycin
Protein synthesis (30S)Aminoglycosides, tetracyclinesGentamicin, doxycycline
Protein synthesis (50S)Macrolides, chloramphenicol, clindamycin, streptograminsAzithromycin, linezolid
DNA/RNA synthesisFluoroquinolones, rifamycinsCiprofloxacin, rifampin
Folate synthesisSulfonamides, dihydrofolate reductase inhibitorsSulfamethoxazole, trimethoprim

🧫 Cell-Wall Synthesis Inhibitors

Penicillins

  • Mechanism
    • Bind penicillin-binding proteins (PBPs) on bacterial cell membrane
    • Inhibit transpeptidase → prevent cross-linking of peptidoglycan
    • Activate autolytic enzymes → cell lysis (bactericidal)
  • Resistance
    • β-lactamase production — cleaves β-lactam ring (e.g., staphylococci, many Gram-negatives)
    • Altered PBPs — reduced binding affinity (e.g., MRSA, penicillin-resistant pneumococci)
    • Porin changes — reduced drug entry (e.g., Pseudomonas)
  • Subgroups
    • Antistaphylococcal — nafcillin, oxacillin, methicillin; narrow, β-lactamase-resistant; not MRSA
    • Natural — penicillin G, penicillin V; narrow, β-lactamase-sensitive; Strep, Treponema
    • Aminopenicillins — ampicillin, amoxicillin; broad, β-lactamase-sensitive; Listeria, E. coli, H. pylori
    • Antipseudomonal — piperacillin; very broad, β-lactamase-sensitive; Pseudomonas, Gram-negatives
  • Pharmacokinetics
    • Most renal clearance (active tubular secretion); probenecid blocks secretion → ↑ levels
    • Nafcillin/oxacillin — biliary elimination
    • Benzathine penicillin G — repository form; half-life ≈ 2 weeks
  • Adverse effects
    • Hypersensitivity (5–7%) — types I–IV; urticaria, anaphylaxis, Stevens–Johnson
    • Complete cross-allergenicity among penicillins
    • GI distress — especially ampicillin
    • Jarisch–Herxheimer reaction — during syphilis treatment (fever, chills, myalgia)

Cephalosporins

  • Mechanism & resistance — identical to penicillins
  • Generations
    • 1st — cefazolin, cephalexin; Gram+ cocci (not MRSA), E. coli, Klebsiella, Proteus; surgical prophylaxis
    • 2nd — cefotetan, cefoxitin, cefuroxime; ↑ Gram− coverage, some anaerobes
    • 3rd — ceftriaxone, cefotaxime, cefdinir, cefixime, ceftazidime; broad Gram−, Neisseria, Pseudomonas (ceftazidime); penetrate CNS
    • 4th — cefepime; wider spectrum incl. Pseudomonas; resistant to many β-lactamases; penetrates CNS
  • Pharmacokinetics
    • Renal clearance (probenecid blocks secretion); ceftriaxone — biliary
    • Dose reduction in renal dysfunction
  • Adverse effects
    • Hypersensitivity (~2%) — rashes, drug fever
    • Positive Coombs test (hemolysis rare)
    • Partial cross-allergenicity with penicillins (~5%)

Carbapenems & Monobactams

  • Imipenem / Meropenem
    • Broadest spectrum — Gram+, Gram−, anaerobes; resistant to β-lactamases
    • Imipenem + cilastatin (renal dehydropeptidase inhibitor) prevents nephrotoxic metabolite
    • Renal elimination; dose reduction in renal failure
    • SE: GI distress, drug fever, CNS (seizures — imipenem, especially with renal dysfunction)
  • Aztreonam
    • Monobactam; active only against Gram− rods
    • Resistant to β-lactamases
    • No cross-allergenicity with penicillins or cephalosporins

Vancomycin

  • Mechanism
    • Binds D-Ala-D-Ala terminus of muramyl pentapeptide
    • Sterically hinders transglycosylation → prevents peptidoglycan elongation
    • Does not bind PBPs
  • Spectrum — MRSA, enterococci, C. difficile (oral for colitis)
  • Resistance
    • VRE / VRSA — change in muramyl pentapeptide: D-Ala replaced by D-Lactate → reduced binding
  • Pharmacokinetics
    • IV for systemic; oral for colitis (not absorbed)
    • Enters bone, most tissues; poor CNS penetration
    • Renal clearance; dose reduction in renal dysfunction
  • Adverse effects
    • Red man syndrome — histamine release (infusion-related)
    • Ototoxicity — usually permanent; additive with other agents
    • Nephrotoxicity — mild, additive with aminoglycosides, amphotericin B, cisplatin
⚠️ Exam Trap
  • Vancomycin is not a β-lactam; it binds D-Ala-D-Ala, not PBPs.
  • MRSA resistance is due to altered PBPs (not β-lactamase).

🧬 Protein Synthesis Inhibitors

30S Ribosomal Subunit

  • Aminoglycosides — bactericidal
    • Gentamicin, tobramycin, amikacin, streptomycin
    • O₂-dependent uptake → anaerobes innately resistant
    • Spectrum: Gram− rods; synergistic with β-lactams for enterococci & Pseudomonas
    • SE: nephrotoxicity, ototoxicity (irreversible), neuromuscular blockade
    • Once-daily dosing leverages post-antibiotic effect; toxicity is total-dose dependent
  • Tetracyclines — bacteriostatic
    • Doxycycline, minocycline, tigecycline
    • Broad: Chlamydia, Mycoplasma, Rickettsia, Borrelia, H. pylori, Brucella
    • Doxycycline — prostatitis (high prostatic fluid levels)
    • Minocycline — meningococcal carrier state
    • Tigecycline — resistant Gram+ (MRSA, VRE), Gram−, anaerobes
    • SE: tooth enamel dysplasia, bone growth inhibition (children), phototoxicity, GI distress, vestibular (minocycline)
    • Absorption reduced by divalent cations (Ca²⁺, Mg²⁺, Fe²⁺)

50S Ribosomal Subunit

  • Macrolides — bacteriostatic
    • Erythromycin, azithromycin, clarithromycin
    • Spectrum: Gram+ cocci (not MRSA), atypical (Chlamydia, Mycoplasma, Legionella), Campylobacter, MAC, H. pylori
    • SE: GI distress (motilin receptor stimulation), reversible deafness (high dose), QT prolongation
    • Cytochrome P450 inhibition
  • Clindamycin — bacteriostatic
    • Spectrum: Gram+ cocci (incl. CA-MRSA), anaerobes (incl. B. fragilis)
    • Concentrates in bone → osteomyelitis
    • SE: pseudomembranous colitis (C. difficile) — most common cause
  • Chloramphenicol — bacteriostatic
    • Wide spectrum; backup for Salmonella typhi, B. fragilis, Rickettsia, meningitis
    • Hepatic glucuronidation; dose reduction in neonates/liver dysfunction
    • SE: dose-dependent marrow suppression, aplastic anemia (1:35,000), gray baby syndrome
  • Linezolid — bacteriostatic
    • Inhibits initiation complex (50S)
    • Spectrum: VRSA, VRE, drug-resistant pneumococci
    • SE: bone marrow suppression (platelets), MAO-A/B inhibition
  • Quinupristin-Dalfopristin — bacteriostatic
    • Spectrum: VRSA, drug-resistant Gram+
    • Active against E. faecium (including VRE), not E. faecalis
    • SE: diarrhea, jaundice, severe headache
📌 High-Yield
  • Aminoglycosides are concentration-dependent killers; macrolides are time-dependent.
  • Linezolid is effective against both E. faecium and E. faecalis VRE; quinupristin-dalfopristin covers only E. faecium.
DrugRibosomal TargetKey SpectrumDistinctive SE
Gentamicin30SGram− rodsNephrotoxicity, ototoxicity
Doxycycline30SChlamydia, Rickettsia, LymePhototoxicity, tooth discoloration
Azithromycin50SAtypicals, LegionellaQT prolongation, GI distress
Clindamycin50SAnaerobic, CA-MRSAPseudomembranous colitis
Linezolid50SVRE, VRSAMarrow suppression, MAO inhibition

🧪 Nucleic Acid & Folate Synthesis Inhibitors

Folate Synthesis Inhibitors

  • Sulfonamides
    • Competitive inhibitors of p-aminobenzoic acid (PABA) → block dihydropteroate synthase
    • Bacteriostatic
    • Resistance: altered enzyme, ↑ PABA production, exogenous folate use
    • Sulfasalazine — prodrug; active in ulcerative colitis & rheumatoid arthritis
    • Ag sulfadiazine — burns
  • Trimethoprim / Pyrimethamine
    • Inhibit dihydrofolate reductase (DHFR)
    • Synergy with sulfonamides — sequential blockade
  • Trimethoprim-Sulfamethoxazole (TMP-SMX, cotrimoxazole)
    • Bacterial — Nocardia (DOC), Listeria (backup), Gram− (E. coli, Salmonella, Shigella), Staph (incl. CA-MRSA)
    • Fungal — Pneumocystis jirovecii (DOC; alternatives: pentamidine, atovaquone)
    • Protozoal — Toxoplasma (sulfadiazine + pyrimethamine)
  • Pharmacokinetics
    • Sulfonamides — hepatic acetylation; renal excretion; crystalluria (older agents)
    • High protein binding → kernicterus risk (avoid in 3rd trimester)
  • Adverse effects (sulfonamides)
    • Hypersensitivity (Stevens–Johnson, rashes)
    • Hemolysis in G6PD deficiency
    • Phototoxicity
    • Trimethoprim — bone marrow suppression (leukopenia)

Fluoroquinolones

  • Mechanism
    • Inhibit topoisomerase II (DNA gyrase) and topoisomerase IV → prevent DNA replication
    • Bactericidal
  • Spectrum
    • UTIs, Gram− infections (ciprofloxacin)
    • Drug-resistant pneumococci (levofloxacin)
    • Bacillus anthracis (anthrax)
  • Pharmacokinetics
    • Absorption reduced by iron/calcium
    • Renal clearance (filtration + secretion); probenecid inhibits secretion
    • Dose reduction in renal dysfunction
  • Adverse effects
    • Tendonitis / tendon rupture (black box warning)
    • Peripheral neuropathy
    • Phototoxicity, rashes
    • CNS: insomnia, dizziness, headache
    • Contraindicated in pregnancy & children (chondrogenesis inhibition)
⚠️ Exam Trap
  • Fluoroquinolones are contraindicated in pregnancy and children < 18 years due to cartilage damage.
  • TMP-SMX is the DOC for Pneumocystis jirovecii and Nocardia.

💊 Other Antimicrobial Agents

Metronidazole

  • Mechanism
    • Converted to reactive free radicals by ferredoxin in anaerobic organisms
    • Binds DNA → strand breakage (bactericidal)
  • Spectrum
    • Antiprotozoal — Giardia, Trichomonas, Entamoeba
    • Antibacterial — anaerobes (Bacteroides, Clostridium), Gardnerella, H. pylori
    • DOC for pseudomembranous colitis (C. difficile)
  • Adverse effects
    • Metallic taste
    • Disulfiram-like reaction with alcohol

β-Lactamase Inhibitors

  • Clavulanic acid, sulbactam, tazobactam
  • Used in combination with penicillins to extend spectrum
  • Examples: amoxicillin-clavulanate, piperacillin-tazobactam
📌 Clinical Pearl
  • Metronidazole is the drug of choice for C. difficile colitis and most anaerobic infections above the diaphragm.

🫁 Antitubercular Drugs

  • Combination therapy is mandatory
    • Delays/prevents resistance
    • Provides additive / synergistic effects
    • Standard regimen: 2–4 drugs from the first-line list
  • First-line agents
    • Isoniazid (INH), rifampin, ethambutol, pyrazinamide
  • Prophylaxis
    • Isoniazid 9 months or rifampin 4 months
    • May be combined
  • MAC (Mycobacterium avium-intracellulare)
    • Prophylaxis: azithromycin or clarithromycin
    • Treatment: clarithromycin + ethambutol + rifabutin
DrugMechanismKey Adverse Effects
Isoniazid (INH) Inhibits mycolic acid synthesis (prodrug; activated by catalase) Hepatitis (age-dependent), peripheral neuritis (use B6), sideroblastic anemia, SLE (slow acetylators)
Rifampin Inhibits DNA-dependent RNA polymerase Hepatitis, P450 induction, red-orange secretions (urine, tears, sweat)
Ethambutol Inhibits arabinogalactan synthesis (cell wall) Dose-dependent retrobulbar neuritis → ↓ visual acuity, red-green color discrimination
Pyrazinamide Unknown (acidic environment activity) Hepatitis, hyperuricemia (gout)
Streptomycin 30S protein synthesis inhibition (aminoglycoside) Deafness (irreversible), vestibular dysfunction, nephrotoxicity
⚠️ Exam Trap
  • Isoniazid resistance is often due to katG gene deletion (catalase needed for prodrug activation).
  • Rifampin causes P450 induction → reduces efficacy of oral contraceptives, warfarin, etc.
  • Ethambutol toxicity is dose-dependent and affects red-green color vision first.
📌 High-Yield
  • Always give pyridoxine (vitamin B6) with isoniazid to prevent peripheral neuropathy.
  • Rifampin metabolites cause orange-red discoloration of body fluids — reassure patients.
INH + Rifampin + Ethambutol + Pyrazinamide Standard 4-drug regimen

Clinical Pearls & High-Yield Facts

Drugs to Avoid in Pregnancy

  • Aminoglycosides — ototoxicity, nephrotoxicity
  • Fluoroquinolones — cartilage damage
  • Sulfonamides — kernicterus risk (3rd trimester)
  • Tetracyclines — tooth/bone effects

Phototoxic Agents

  • Tetracyclines (especially demeclocycline, doxycycline)
  • Sulfonamides
  • Fluoroquinolones

Community-Acquired Pneumonia (CAP)

  • Most common pathogens in patients with no comorbidity: M. pneumoniae, C. pneumoniae, viruses
  • In smokers: Streptococcus pneumoniae more frequent
  • Macrolides cover most of these (except viruses) → first-line empiric therapy

H. pylori Eradication Regimens

  • Classic "BMT" — bismuth, metronidazole, tetracycline
  • Alternative: clarithromycin, amoxicillin, omeprazole (triple therapy)

Key Resistance Mechanisms

  • β-lactams — β-lactamase, altered PBPs, porin changes
  • Aminoglycosides — acetyl/phosphoryl/adenylyl transferases (conjugation inactivation)
  • Macrolides — methyltransferases (50S alteration), efflux pumps
  • Tetracyclines — efflux pumps
  • Fluoroquinolones — altered topoisomerases, efflux
  • Chloramphenicol — acetyltransferase
  • Vancomycin — D-Ala → D-Lactate change (VRE/VRSA)
  • INH — katG deletion (loss of catalase activation)
📌 Clinical Pearl
  • For MRSA: vancomycin, linezolid, daptomycin, or ceftaroline (depending on site).
  • For Pseudomonas: antipseudomonal penicillins, ceftazidime, cefepime, carbapenems, or aminoglycosides.
  • For UTIs: TMP-SMX, fluoroquinolones, nitrofurantoin (reserve quinolones for complicated cases).
  • For STIs: ceftriaxone (gonorrhea), doxycycline or azithromycin (chlamydia), penicillin G (syphilis).
⚠️ Exam Trap
  • Bacteriostatic + bactericidal combinations can be antagonistic — e.g., tetracycline + penicillin.
  • Probenecid prolongs the half-life of penicillins, cephalosporins, and fluoroquinolones by blocking renal tubular secretion.